Jan 29 2021
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CTFFIND 4
a new version of ctffind (a program for finding CTFs of electron micrographs) that should run significantly faster than CTFFIND 3 and may give slightly improved results when processing data from detectors other than scanned photographic film.
Updated versions:
4.1.14-c7 | Linux 64
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Jan 29 2021
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SIMPLE
(Single-particle IMage Processing Linux Engine) does ab initio 3D reconstruction (programs cluster & origami), heterogeneity analysis (programs cluster, origami & cycler), and high-resolution refinement (programs align, reconstruct, automask & cycler).
Updated versions:
3.0 | OS X INTEL
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Jan 28 2021
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Google Cloud SDK
tools and libraries for interacting with Google Cloud products and services.
Updated versions:
316.0.0 | Linux 64
316.0.0 | OS X INTEL
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Jan 26 2021
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CAVER Analyst
a software tool for the calculation, analysis, and real-time visualization of access tunnels and channels in static and dynamic protein structures with an intuitive GUI.
Updated versions:
2.0-beta | OS X INTEL
2.0-beta | Linux 64
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Jan 25 2021
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PEET
(Particle Estimation for Electron Tomography) a package for aligning and averaging particles in 3-D subvolumes extracted from tomograms. If PEET and IMOD are both installed, most PEET operations are available from the eTomo graphical user interface in IMOD. PEET is written in Matlab and a compiled version is distributed along with the Matlab runtime environment needed to run it.
Updated versions:
1.15.0 | OS X INTEL
1.15.0 | Linux 64
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Jan 25 2021
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PHENIX
(Python-based Hierarchical Environment for INtegrated Xtallography) a software suite for the automated determination of molecular structures using X-ray crystallography and other methods.
Updated versions:
1.19.1-4122 | OS X INTEL
1.19.1-4122 | Linux 64
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Jan 22 2021
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MAFFT
a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <200 sequences), FFT-NS-2 (fast; for alignment of <30,000 sequences).
Updated versions:
7.475 | Linux 64
7.475 | OS X INTEL
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Jan 22 2021
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nmrglue
a python module for reading, writing, and interacting with the spectral data stored in a number of common NMR data formats.
Updated versions:
0.7 | OS X INTEL
0.7 | Linux 64
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Jan 21 2021
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LightDock
a protein-protein, protein-peptide and protein-DNA docking framework based on the Glowworm Swarm Optimization (GSO) algorithm.
Updated versions:
0.8.1 | Linux 64
0.8.1 | OS X INTEL
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Jan 20 2021
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Julia
is a flexible dynamic language appropriate for scientific and numerical computing with performance comparable to traditional statically-typed languages.
Updated versions:
1.4.2 | Linux 64
1.3.1 | Linux 64
1.4.2 | OS X INTEL
1.3.1 | OS X INTEL
1.5.3 | Linux 64
1.5.3 | OS X INTEL
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Jan 20 2021
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schrodinger_suite
A Schrodinger installation that does not include the SBGrid license, otherwise same as schrodinger.
Updated versions:
2020-4 | Linux 64
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Jan 12 2021
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CHAP
(The Channel Annotation Package) a tool for the functional annotation of novel ion channel structures that provides information on the biophysical properties of the ion permeation pathway by utilising molecular dynamics simulations.
Updated versions:
0.9.1 | OS X INTEL
0.8.0 | OS X INTEL
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Jan 04 2021
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MicroED tools
for the conversion of microED data collected on TVIPS TemCam-F416, Thermo Fisher CetaD, and Thermo Fisher Falcon III to SMV crystallographic format (*.img)
Updated versions:
20201231 | Linux 64
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