Software Updates

servalcat

structure refinement and validation for crystallography and single particle analysis.

LigPlot+

the successor to the original LIGPLOT program for automatic generation of 2D ligand-protein interaction diagrams. It is run from an intuitive java interface which allows on-screen editing of the plots via mouse click-and-drag operations.

Geneious

a powerful and comprehensive suite of molecular biology and NGS analysis tools.

CcpNmr

a series of programs for macromolecular NMR spectroscopy integrated with the CCP data model, inspired partly by the program ANSIG (Per Kraulis) and partly by the program Sparky (T.D.Goddard and D.G.Kneller, UCSF).

CryoAssess

an automatic pipeline for cryo-EM data preprocessing and assessment using a combination of deep learning and image analysis tools.

PHENIX

(Python-based Hierarchical Environment for INtegrated Xtallography) a software suite for the automated determination of molecular structures using X-ray crystallography and other methods.

RELION realtime preview

simple python script which enables one to follow the progress of 2D/3D classification and refinement in RELION in real time.

ShelXle

a cute graphical user interface for SHELXL.

Coot

(Crystallographic Object-Oriented Toolkit) supports model building and real space refinement. This application interfaces with refmac, Phenix, and several other applications. Coot was recognized as the best structural biology application in 2008 by SBGrid.