Member Publications

Jump to specific year:

69 Member Publications for January

Previous Month

Corrigendum to 'Plasma concentrations of long chain N-3 fatty acids in early and mid-pregnancy and risk of early preterm birth'.
1. EBioMedicine - published January 9, 2020
2. S F O, T I H, A L TL, M S, S G, C G, P H N, J W, J A L, J LR, A S C, J D F, E L G, W Z
Surrogate R-spondins for tissue-specific potentiation of Wnt Signaling.
1. PLoS One - published January 9, 2020
2. Luca VC, Miao Y, Li X, Hollander MJ, Kuo CJ, Garcia KC
Molecular and Structural Mechanism of Pan-Genotypic HCV NS3/4A Protease Inhibition by Glecaprevir.
1. ACS Chem Biol - published January 8, 2020
2. Timm J, Kosovrasti K, Henes M, Leidner F, Hou S, Ali A, Kurt Yilmaz N, Schiffer CA
Author Correction: In vivo clonal expansion and phenotypes of hypocretin-specific CD4+ T cells in narcolepsy patients and controls.
1. Nat Commun - published January 8, 2020
2. Jiang W, Birtley JR, Hung SC, Wang W, Chiou SH, Macaubas C, Kornum B, Tian L, Huang H, Adler L, Weaver G, Lu L, Ilstad-Minnihan A, Somasundaram S, Ayyangar S, Davis MM, Stern LJ, Mellins ED
The use of Trichomonas vaginalis purine nucleoside phosphorylase to activate fludarabine in the treatment of solid tumors.
1. Cancer Chemother Pharmacol - published January 8, 2020
2. Parker WB, Allan PW, Waud WR, Hong J, Gilbert-Ross M, Achyut BR, Joshi D, Behbahani T, Rab R, Ealick SE, Sorscher EJ
Mapping and engineering the interaction between adiponectin and T-cadherin.
1. J Biol Chem - published January 8, 2020
2. Pascolutti R, Erlandson SC, Burri DJ, Zheng S, Kruse AC
The mechanistic and functional profile of the therapeutic anti-IgE antibody ligelizumab differs from omalizumab.
1. Nat Commun - published January 8, 2020
2. Gasser P, Tarchevskaya SS, Guntern P, Brigger D, Ruppli R, Zbären N, Kleinboelting S, Heusser C, Jardetzky TS, Eggel A
Mechanistic insights into transcription factor cooperativity and its impact on protein-phenotype interactions.
1. Nat Commun - published January 8, 2020
2. Ibarra IL, Hollmann NM, Klaus B, Augsten S, Velten B, Hennig J, Zaugg JB
A genome-wide view of the de-differentiation of central nervous system endothelial cells in culture.
1. Elife - published January 8, 2020
2. Sabbagh MF, Nathans J
Biochemical characterization of biliverdins IXβ/δ generated by a selective heme oxygenase.
1. Biochem J - published January 8, 2020
2. Zhang B, Nesbitt NM, Pereira PJB, Bahou WF
Cryo-EM structure of human type-3 inositol triphosphate receptor reveals the presence of a self-binding peptide that acts as an antagonist.
1. J Biol Chem - published January 8, 2020
2. Azumaya CM, Linton EA, Risener CJ, Nakagawa T, Karakas E
Deep neural network affinity model for BACE inhibitors in D3R Grand Challenge 4.
1. J Comput Aided Mol Des - published January 8, 2020
2. Wang B, Ng HL
Structure of the Vesicular Stomatitis Virus L Protein in Complex with Its Phosphoprotein Cofactor.
1. Cell Rep - published January 7, 2020
2. Jenni S, Bloyet LM, Diaz-Avalos R, Liang B, Whelan SPJ, Grigorieff N, Harrison SC
Delineating the Molecular Basis of the Calmodulin‒bMunc13-2 Interaction by Cross-Linking/Mass Spectrometry-Evidence for a Novel CaM Binding Motif in bMunc13-2.
1. Cells - published January 7, 2020
2. Piotrowski C, Moretti R, Ihling CH, Haedicke A, Liepold T, Lipstein N, Meiler J, Jahn O, Sinz A
The Cap-Snatching SFTSV Endonuclease Domain Is an Antiviral Target.
1. Cell Rep - published January 7, 2020
2. Wang W, Shin WJ, Zhang B, Choi Y, Yoo JS, Zimmerman MI, Frederick TE, Bowman GR, Gross ML, Leung DW, Jung JU, Amarasinghe GK
Comparative modeling and docking of chemokine-receptor interactions with Rosetta.
1. Biochem Biophys Res Commun - published January 7, 2020
2. Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF
Chaperone-assisted structure elucidation with DARPins.
1. Curr Opin Struct Biol - published January 6, 2020
2. Mittl PR, Ernst P, Plückthun A
Electron cryotomography of intact motile cilia defines the basal body to axoneme transition.
1. J Cell Biol - published January 6, 2020
2. Greenan GA, Vale RD, Agard DA
Highly coupled transport can be achieved in free-exchange transport models.
1. J Gen Physiol - published January 6, 2020
2. Hussey GA, Thomas NE, Henzler-Wildman KA
Structure-Activity Relationship in Pyrazolo[4,3-c]pyridines, First Inhibitors of PEX14-PEX5 Protein-Protein Interaction with Trypanocidal Activity.
1. J Med Chem - published January 6, 2020
2. Dawidowski M, Kalel VC, Napolitano V, Fino R, Schorpp K, Emmanouilidis L, Lenhart D, Ostertag M, Kaiser M, Kolonko M, Tippler B, Schliebs W, Dubin G, Mäser P, Tetko IV, Hadian K, Plettenburg O, Erdmann R, Sattler M, Popowicz GM
Kinetic Control of Amyloidogenesis Calls for Unconventional Drugs To Fight Alzheimer's Disease.
1. ACS Chem Neurosci - published January 6, 2020
2. Caflisch A
The structural basis for cohesin-CTCF-anchored loops.
1. Nature - published January 6, 2020
2. Li Y, Haarhuis JHI, Cacciatore ÁS, Oldenkamp R, van Ruiten MS, Willems L, Teunissen H, Muir KW, de Wit E, Rowland BD, Panne D
Activation by substoichiometric inhibition.
1. Proc Natl Acad Sci U S A - published January 6, 2020
2. Merdanovic M, Burston SG, Schmitz AL, Köcher S, Knapp S, Clausen T, Kaiser M, Huber R, Ehrmann M
Biophysical prediction of protein-peptide interactions and signaling networks using machine learning.
1. Nat Methods - published January 6, 2020
2. Cunningham JM, Koytiger G, Sorger PK, AlQuraishi M
The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments.
1. BMC Biol - published January 6, 2020
2. Rampelt H, Sucec I, Bersch B, Horten P, Perschil I, Martinou JC, van der Laan M, Wiedemann N, Schanda P, Pfanner N
The Roles of Cullin-2 E3 Ubiquitin Ligase Complex in Cancer.
1. Adv Exp Med Biol - published January 4, 2020
2. Liu X, Zurlo G, Zhang Q
Preparation, Characterization, and Properties of Novel Ti-Zr-Be-Co Bulk Metallic Glasses.
1. Materials (Basel) - published January 4, 2020
2. Gong P, Li F, Jin J
Structural Biology of CRL Ubiquitin Ligases.
1. Adv Exp Med Biol - published January 4, 2020
2. Rusnac DV, Zheng N
Re-examining the spectra of macromolecules. Current practice of spectral quasi B-factor flattening.
1. J Struct Biol - published January 3, 2020
2. Vilas JL, Vargas J, Martinez M, Ramirez-Aportela E, Melero R, Jimenez-Moreno A, Garduño E, Conesa P, Marabini R, Maluenda D, Carazo JM, Sorzano COS
Genetic and phenotypic spectrum associated with IFIH1 gain-of-function.
1. Hum Mutat - published January 3, 2020
2. Rice GI, Park S, Gavazzi F, Adang LA, Ayuk LA, Van Eyck L, Seabra L, Barrea C, Battini R, Belot A, Berg S, Billette de Villemeur T, Bley AE, Blumkin L, Boespflug-Tanguy O, Briggs TA, Brimble E, Dale RC, Darin N, Debray FG, De Giorgis V, Denecke J, Doummar D, Drake Af Hagelsrum G, Eleftheriou D, Estienne M, Fazzi E, Feillet F, Galli J, Hartog N, Harvengt J, Heron B, Heron D, Kelly DA, Lev D, Levrat V, Livingston JH, Marti I, Mignot C, Mochel F, Nougues MC, Oppermann I, Pérez-Dueñas B, Popp B, Rodero MP, Rodriguez D, Saletti V, Sharpe C, Tonduti D, Vadlamani G, Van Haren K, Tomas Vila M, Vogt J, Wassmer E, Wiedemann A, Wilson CJ, Zerem A, Zweier C, Zuberi SM, Orcesi S, Vanderver AL, Hur S, Crow YJ
Crystal Structure and Immunogenicity of the DS-Cav1-Stabilized Fusion Glycoprotein From Respiratory Syncytial Virus Subtype B.
1. Pathog Immun - published January 2, 2020
2. Joyce MG, Bao A, Chen M, Georgiev IS, Ou L, Bylund T, Druz A, Kong WP, Peng D, Rundlet EJ, Van Galen JG, Wang S, Yang Y, Zhang B, Chuang GY, McLellan JS, Graham BS, Mascola JR, Kwong PD
Short direct repeats in the 3'-untranslated region are involved in subgenomic flaviviral RNA production.
1. J Virol - published January 2, 2020
2. Zhang QY, Li XF, Niu X, Li N, Wang HJ, Deng CL, Ye HQ, Huang XY, Chen Q, Xu YP, Dong HL, Li XD, Zhao H, Shi PY, Yuan ZM, Gong P, Fang X, Qin CF, Zhang B
Measuring local-directional resolution and local anisotropy in cryo-EM maps.
1. Nat Commun - published January 2, 2020
2. Vilas JL, Tagare HD, Vargas J, Carazo JM, Sorzano COS
Apoptosis signaling molecules as treatment targets in head and neck squamous cell carcinoma.
1. Laryngoscope - published January 2, 2020
2. Ow TJ, Thomas C, Fulcher CD, Chen J, López A, Reyna DE, Prystowsky MB, Smith RV, Schiff BA, Rosenblatt G, Belbin TJ, Harris TM, Childs GC, Kawachi N, Schlecht NF, Gavathiotis E
Molecular Basis of Opioid Action: From Structures to New Leads.
1. Biol Psychiatry - published January 1, 2020
2. Manglik A
Constructing a yeast to express the largest cellulosome complex on the cell surface.
1. Proc Natl Acad Sci U S A - published January 1, 2020
2. Anandharaj M, Lin YJ, Rani RP, Nadendla EK, Ho MC, Huang CC, Cheng JF, Chang JJ, Li WH
Crystal structures of p120RasGAP N-terminal SH2 domain in its apo form and in complex with a p190RhoGAP phosphotyrosine peptide.
1. PLoS One - published January 1, 2020
2. Jaber Chehayeb R, Stiegler AL, Boggon TJ
l-Fucose prevention of renal ischaemia/reperfusion injury in Mice.
1. FASEB J - published January 1, 2020
2. Howard MC, Nauser CL, Farrar CA, Wallis R, Sacks SH
Two forms of Opa1 cooperate to complete fusion of the mitochondrial inner-membrane.
1. Elife - published January 1, 2020
2. Ge Y, Shi X, Boopathy S, McDonald J, Smith AW, Chao LH
Getting a clinical innovation into practice: An introduction to implementation strategies.
1. Psychiatry Res - published January 1, 2020
2. Kirchner JE, Smith JL, Powell BJ, Waltz TJ, Proctor EK
Structural basis for adhesion G protein-coupled receptor Gpr126 function.
1. Nat Commun - published January 1, 2020
2. Leon K, Cunningham RL, Riback JA, Feldman E, Li J, Sosnick TR, Zhao M, Monk KR, Araç D
Structural basis for COMPASS recognition of an H2B-ubiquitinated nucleosome.
1. Elife - published January 1, 2020
2. Worden EJ, Zhang X, Wolberger C
Structure-function insights into the initial step of DNA integration by a CRISPR-Cas-Transposon complex.
1. Cell Res - published January 1, 2020
2. Jia N, Xie W, de la Cruz MJ, Eng ET, Patel DJ
A key interaction with RPA orients XPA in NER complexes.
1. Nucleic Acids Res - published January 1, 2020
2. Topolska-Woś AM, Sugitani N, Cordoba JJ, Le Meur KV, Le Meur RA, Kim HS, Yeo JE, Rosenberg D, Hammel M, Schärer OD, Chazin WJ
Discovery of BAY-985, a Highly Selective TBK1/IKKε Inhibitor.
1. J Med Chem - published January 1, 2020
2. Lefranc J, Schulze VK, Hillig RC, Briem H, Prinz F, Mengel A, Heinrich T, Balint J, Rengachari S, Irlbacher H, Stöckigt D, Bömer U, Bader B, Gradl SN, Nising CF, von Nussbaum F, Mumberg D, Panne D, Wengner AM
Atypical KRASG12R Mutant Is Impaired in PI3K Signaling and Macropinocytosis in Pancreatic Cancer.
1. Cancer Discov - published January 1, 2020
2. Hobbs GA, Baker NM, Miermont AM, Thurman RD, Pierobon M, Tran TH, Anderson AO, Waters AM, Diehl JN, Papke B, Hodge RG, Klomp JE, Goodwin CM, DeLiberty JM, Wang J, Ng RWS, Gautam P, Bryant KL, Esposito D, Campbell SL, Petricoin EF 3rd, Simanshu DK, Aguirre AJ, Wolpin BM, Wennerberg K, Rudloff U, Cox AD, Der CJ
Resting state structure of the hyperdepolarization activated two-pore channel 3.
1. Proc Natl Acad Sci U S A - published January 1, 2020
2. Dickinson MS, Myasnikov A, Eriksen J, Poweleit N, Stroud RM
PISA-SPARKY: an interactive SPARKY plugin to analyze oriented solid-state NMR spectra of helical membrane proteins.
1. Bioinformatics - published January 1, 2020
2. Weber DK, Wang S, Markley JL, Veglia G, Lee W
Differences in the chitinolytic activity of mammalian chitinases on soluble and insoluble substrates.
1. Protein Sci - published January 1, 2020
2. Barad BA, Liu L, Diaz RE, Basilio R, Van Dyken SJ, Locksley RM, Fraser JS
X-ray Crystal Structures of the Influenza M2 Proton Channel Drug-Resistant V27A Mutant Bound to a Spiro-Adamantyl Amine Inhibitor Reveal the Mechanism of Adamantane Resistance.
1. Biochemistry - published January 1, 2020
2. Thomaston JL, Konstantinidi A, Liu L, Lambrinidis G, Tan J, Caffrey M, Wang J, Degrado WF, Kolocouris A
Cryo-EM structure of full-length HIV-1 Env bound with the Fab of antibody PG16.
1. J Mol Biol - published January 1, 2020
2. Pan J, Peng H, Chen B, Harrison SC
Structure-based design of a potent and selective covalent inhibitor for SRC kinase that targets a p-Loop cysteine.
1. J Med Chem - published January 1, 2020
2. Du G, Rao S, Gurbani D, Henning NJ, Jiang J, Che J, Yang A, Ficarro SB, Marto JA, Aguirre AJ, Sorger PK, Westover KD, Zhang T, Gray NS
Small Molecule Inhibitor Screen Reveals Calcium Channel Signaling as a Mechanistic Mediator of Clostridium difficile TcdB-Induced Necrosis.
1. ACS Chem Biol - published January 1, 2020
2. Farrow MA, Chumber NM, Bloch SC, King M, Moton-Melancon K, Shupe J, Washington MK, Spiller BW, Lacy DB
Structural basis of substrate recognition by a polypeptide processing and secretion transporter.
1. Elife - published January 1, 2020
2. Kieuvongngam V, Olinares PDB, Palillo A, Oldham ML, Chait BT, Chen J
Functional activity of anti-LINGO-1 antibody opicinumab requires target engagement at a secondary binding site.
1. MAbs - published January 1, 2020
2. Hanf KJM, Arndt JW, Liu Y, Gong BJ, Rushe M, Sopko R, Massol R, Smith B, Gao Y, Dalkilic-Liddle I, Lee X, Mojta S, Shao Z, Mi S, Pepinsky RB
Staphylococcus aureus cell growth and division are regulated by an amidase that trims peptides from uncrosslinked peptidoglycan.
1. Nat Microbiol - published January 1, 2020
2. Do T, Schaefer K, Santiago AG, Coe KA, Fernandes PB, Kahne D, Pinho MG, Walker S
The Bcl-2 Family: Ancient Origins, Conserved Structures, and Divergent Mechanisms.
1. Biomolecules - published January 1, 2020
2. Banjara S, Suraweera CD, Hinds MG, Kvansakul M
Structure of the neurotensin receptor 1 in complex with β-arrestin 1.
1. Nature - published January 1, 2020
2. Huang W, Masureel M, Qianhui Q, Janetzko J, Inoue A, Kato HE, Robertson MJ, Nguyen KC, Glenn JS, Skiniotis G, Kobilka BK
Structure of the M2 muscarinic receptor-β-arrestin complex in a lipid nanodisc.
1. Nature - published January 1, 2020
2. Staus DP, Hu H, Robertson MJ, Kleinhenz ALW, Wingler LM, Capel WD, Latorraca NR, Lefkowitz RJ, Skiniotis G
Characterizing Protein-Ligand Binding Using Atomistic Simulation and Machine Learning: Application to Drug Resistance in HIV-1 Protease.
1. J Chem Theory Comput - published January 1, 2020
2. Whitfield TW, Ragland DA, Zeldovich KB, Schiffer CA
Author Correction: FRQ-CK1 interaction determines the period of circadian rhythms in Neurospora.
1. Nat Commun - published January 1, 2020
2. Liu X, Chen A, Caicedo-Casso A, Cui G, Du M, He Q, Lim S, Kim HJ, Hong CI, Liu Y
Small Molecule Compounds That Inhibit Antioxidant Response Gene Expression in an Inducer-Dependent Manner.
1. ACS Infect Dis - published January 1, 2020
2. Edwards MR, Liu G, De S, Sourimant J, Pietzsch C, Johnson B, Amarasinghe GK, Leung DW, Bukreyev A, Plemper RK, Aron Z, Bowlin TL, Moir DT, Basler CF
Mycobacterium marinum produces distinct mycobactin and carboxymycobactin siderophores to promote growth in broth and phagocytes.
1. Cell Microbiol - published January 1, 2020
2. Knobloch P, Koliwer-Brandl H, Arnold FM, Hanna N, Gonda I, Adenau S, Personnic N, Barisch C, Seeger MA, Soldati T, Hilbi H
Structural analysis of lecithin:cholesterol acyltransferase bound to high density lipoprotein particles.
1. Commun Biol - published January 1, 2020
2. Manthei KA, Patra D, Wilson CJ, Fawaz MV, Piersimoni L, Shenkar JC, Yuan W, Andrews PC, Engen JR, Schwendeman A, Ohi MD, Tesmer JJG
Broad dengue neutralization in mosquitoes expressing an engineered antibody.
1. PLoS Pathog - published January 1, 2020
2. Buchman A, Gamez S, Li M, Antoshechkin I, Li HH, Wang HW, Chen CH, Klein MJ, Duchemin JB, Crowe JE Jr, Paradkar PN, Akbari OS
Modulated control of DNA supercoiling balance by the DNA-wrapping domain of bacterial gyrase.
1. Nucleic Acids Res - published January 1, 2020
2. Hobson MJ, Bryant Z, Berger JM
The Cap-Snatching Mechanism of Bunyaviruses.
1. Trends Microbiol - published January 1, 2020
2. Olschewski S, Cusack S, Rosenthal M
Reporter Assays for Ebola Virus Nucleoprotein Oligomerization, Virion-Like Particle Budding, and Minigenome Activity Reveal the Importance of Nucleoprotein Amino Acid Position 111.
1. Viruses - published January 1, 2020
2. Lin AE, Diehl WE, Cai Y, Finch CL, Akusobi C, Kirchdoerfer RN, Bollinger L, Schaffner SF, Brown EA, Saphire EO, Andersen KG, Kuhn JH, Luban J, Sabeti PC
Structure of a rabies virus polymerase complex from electron cryo-microscopy.
1. Proc Natl Acad Sci U S A - published January 1, 2020
2. Horwitz JA, Jenni S, Harrison SC, Whelan SPJ