Tumblr

SBGridTV

  • A hexameric building block of the capsid of the Bovine Leukemia Virus from Alejandro Buschiazzo's group.

  • Water molecules from an EM structure. Read more in our story on Bridget Carragher and Clint Potter from the New York Structural Biology Center.

  • Jennifer Doudna's Cas9 enzyme in the CRISPR pathway, published in Science Read more in her webtale.

  • Kevin Corbett's structure of C. elegans PCH-2. Read the story and watch the animated gif.

  • The chromatophore vesicle of purple bacteria comprises hundreds of cooperating proteins to convert sunlight into chemical energy. Image Credit: J. Stone, M. Sener, K. Schulten. Read more.

  • A crystal structure from James Berger's group shows how the heterohexameric origin recognition complex (ORC) can switch between two conformations.

  • Jalview Developer Geoff Barton's desk with the JalviewAbacus (right) and displayed a dendrogram (tree) for the set of sequences shown in the alignment, using Jalview linked to Chimera. Read the full story here.

  • From Michael Sattler's group: the ternary complex involving the tandem RNA recognition motif domains of Sxl, a cold-shock domain of the protein Unr bound to a specific RNA sequence motif. Read the details.

  • The thrombin:anophelin complex (PNAS 109, E3649-E3658) from the lab of Pedro José Barbosa Pereira. Read more about Dr. Pereira's background and current research in our recent webtale.

  •  Project MAC display system, circa 1965,

    The Project MAC display system, circa 1965. Read more about the history of molecular graphics software and UCSF Chimera in our SBGrid Tale featuring Bob Langridge and Tom Ferrin.

  • Professor Catherine Drennan of MIT

    The SBGrid Consortium provides structural biologists worldwide with access to the software they need to discover the shapes of the molecules of life. Read more in eLIFE.

Recent Software Updates:

Name Description Date
EMAN2

EMAN2 is a scientific image processing suite with a particular focus on single particle reconstruction from cryoEM images. EMAN2 is a complete refactoring of the origi...

Jan 16
TimeScapes

a Python-based program package that can be used to efficiently detect and characterize significant conformational changes in simulated biomolecular systems.

Jan 16
Coot

(Crystallographic Object-Oriented Toolkit) supports model building and real space refinement. This application interfaces with refmac, Phenix, and several other applic...

Jan 13
SHIFTX2

predicts the backbone and side chain 1H, 13C and 15N chemical shifts for proteins using their structural (PDB) coordinates as input.

Jan 11
Sculptor

an interactive multi-resolution docking and visualization program for low-resolution density maps and atomic structures.

Jan 11
BUSTER

a software system containing crystallographic structure refinement using Bayesian statistical methods (BUSTER), ligand fitting (rhofit) and a fully automated pipeline ...

Jan 11
Geneious

a powerful and comprehensive suite of molecular biology tools.

SBGrid members from academic/non-profit laboratories share a 10-seat license for this suite of tools.

Jan 11
Thanks to the National Science Foundation

With Partial Support from the National Science Foundation Research Coordination Network MCB #0639193 and NSF EAGER #1448069. Please cite SBGrid's eLife paper and follow our publication guidelines.

Latest news

SBGrid Lunch Break: IOTA and PRIME

Tune in January 17th, in a follow up to last week's webinar on cctbx.xfel and DIALS, to learn how to **Get the most out of your XFEL data with IOTA ...

SBGrid Lunch Break with Peter Eastman

Join us February 28th to hear a presentation from Peter Eastman on OpenMM, a tookit for molecular simulation. Dr. Eastman is Senior Software Engineer in Vijay Pande's lab at Stanford ...

SBGrid is now hosting PyMOLWiki

We are happy to announce that effective Sept 12, 2016, the SBGrid Consortium began managing and maintaining PyMOLWiki. Many thanks to Jason Vertrees, who spent over 10 years creating, building, ...