Jun 24 2022
|
ColabFold
an easy-to-use Notebook based environment for fast and convenient protein structure predictions.
Updated versions:
1.3.0 | Linux 64
|
Jun 21 2022
|
globuscli
a standalone application that can be installed on the user’s machine and used to access the Globus service.
Updated versions:
3.6.0 | Linux 64
|
Jun 20 2022
|
PHENIX
(Python-based Hierarchical Environment for INtegrated Xtallography) a software suite for the automated determination of molecular structures using X-ray crystallography and other methods.
Updated versions:
1.20.1-4487 | OS X INTEL
|
Jun 18 2022
|
ChimeraX
the next-generation molecular visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. Compared to Chimera, ChimeraX has improved graphics (e.g. interactive ambient shadows); faster handling of large structures (millions of atoms); and a more modern, single-window user interface.
Updated versions:
1.4 | Linux 64
1.4 | OS X INTEL
|
Jun 16 2022
|
Global Phasing Suite
combined installation of autoPROC, BUSTER, and SHARP available to Global Phasing consortium members.
Updated versions:
20220203 | Linux 64
20211020 | Linux 64
20220203 | OS X INTEL
20211020 | OS X INTEL
20220608 | OS X INTEL
20220608 | Linux 64
|
Jun 16 2022
|
autoPROC
combines third-party processing programs with new tools for automated data processing of single-sweep, multi-sweep and multi-crystal X-ray diffraction data.
Updated versions:
20220608 | Linux 64
20220608 | OS X INTEL
|
Jun 15 2022
|
BUSTER
a software system containing crystallographic structure refinement using Bayesian statistical methods (BUSTER), ligand fitting (rhofit) and a fully automated pipeline (Pipedream) to drive a structure based fragment/ligand screening pathway.
Updated versions:
20220608 | Linux 64
20220608 | OS X INTEL
|
Jun 15 2022
|
AlphaFold
an implementation of the inference pipeline of AlphaFold v2.0 using a completely new model that was entered in CASP14.
Updated versions:
2.2.2 | Linux 64
|
Jun 15 2022
|
SBGrid Installer
a graphical installation client used to install the SBGrid software collection on Apple OSX computers running MacOSX v10.13 - 10.15. Users can cherrypick a subset of applications for installation on their laptops or desktops. Software updates are highlighted, but users trigger the software update manually at their convenience.
Updated versions:
2.6.17 | Linux 64
2.6.17 | OS X INTEL
|
Jun 15 2022
|
RELION Block-based-recontruction
RELION with block-based reconstruction modifications
Updated versions:
20220512 | Linux 64
|
Jun 10 2022
|
CUDA
redistributable software libraries to support CUDA applications for Linux.
Updated versions:
11.6 | Linux 64
|
Jun 10 2022
|
MotionCor2
a multi-GPU program that corrects beam-induced sample motion on dose fractionated movie stacks. It implements a robust iterative alignment algorithm that delivers precise measurement and correction of both global and non-uniform local motions at single pixel level across the whole frame, suitable for both single-particle and tomographic images.
Updated versions:
1.5.0 | Linux 64
|
Jun 10 2022
|
CUDA
redistributable software libraries to support CUDA applications for Linux.
Updated versions:
11.6.2 | Linux 64
|
Jun 10 2022
|
PyMOL
widely used molecular visualization package developed by Warren DeLano, now maintained by Schödinger, LLC. This installation includes official incentive builds of PyMOL.
Updated versions:
2.5.2_294 | OS X INTEL
2.5.1 | OS X INTEL
2.2.3 | OS X INTEL
2.5.2_293 | Linux 64
2.5.1 | Linux 64
2.5.0_openvr | Linux 64
2.2.3 | Linux 64
2.5.0_279 | OS X INTEL
2.5.0_268 | Linux 64
2.4.1_198 | Linux 64
2.4.1_228 | OS X INTEL
|
Jun 09 2022
|
OpenFold
A faithful PyTorch reproduction of DeepMind's AlphaFold 2.
Updated versions:
0.1.0 | Linux 64
|
Jun 08 2022
|
BioXTAS RAW
a program for analysis of SAXS data that enables creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced processing using GNOM, DAMMIF, and AMBIMETER. It also allows easy processing of inline SEC-SAXS data.
Updated versions:
2.1.3 | Linux 64
2.1.3 | OS X INTEL
|
Jun 08 2022
|
RELION
(REgularised LIkelihood OptimisatioN) a stand-alone computer program for Maximum A Posteriori (MAP) refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy.
Updated versions:
3.0.8_cu10.1 | Linux 64
|
Jun 06 2022
|
crYOLO
a novel automated particle picking software based on the deep learning object detection system 'You Only Look Once' (YOLO). CrYOLO is available as a standalone program under http://sphire.mpg.de/ and is part of the image processing workflow in SPHIRE.
Updated versions:
1.8.3_cu11 | Linux 64
1.8.3-cpu | Linux 64
1.8.3 | Linux 64
|
Jun 06 2022
|
EVcouplings
a tool to predict protein structure, function, and mutations using evolutionary sequence covariation.
Updated versions:
0.1.1 | Linux 64
0.1.1 | OS X INTEL
|
Jun 02 2022
|
CCP-EM
(Collaborative Computational Project for Electron cryo-Microscopy) a software framework and resulting software suite that includes tools for project and data management along with a focus on building and refinement of atomic models into cryo-EM reconstructions. The framework allows easy access to various programs and utilities from collaborators via Python task wrappers and a user-friendly graphical user interface or a command-line interface suitable for scripting.
Updated versions:
1.6.0 | OS X INTEL
1.6.0 | Linux 64
|
Jun 02 2022
|
Coot
(Crystallographic Object-Oriented Toolkit) supports model building and real space refinement. This application interfaces with refmac, Phenix, and several other applications. Coot was recognized as the best structural biology application in 2008 by SBGrid.
Updated versions:
1.005 | Linux 64
|
Jun 01 2022
|
BioXTAS RAW
a program for analysis of SAXS data that enables creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced processing using GNOM, DAMMIF, and AMBIMETER. It also allows easy processing of inline SEC-SAXS data.
Updated versions:
2.1.2 | Linux 64
2.1.1 | Linux 64
2.1.1 | OS X INTEL
2.1.2 | OS X INTEL
|