Supported Applications


  • Description

    a universal toolkit for rapid and fully automated location and characterization of channels and pores in molecular structures. The core of the MOLE algorithm is a Dijsktra path search algorithm, which is applied to a Voronoi mesh. MOLE is a powerful software program for exploring large molecular channels, complex networks of channels and molecular dynamics trajectories in which analysis of a large number of snapshots is required.

  • Primary Citation*

    D. Sehnal, R. S. Vařeková, K. Berka, L. Pravda, V. Navrátilová, P. Banáš, C.-M. Ionescu, M. Otyepka, and J. Koča. 2013. MOLE 2.0: Advanced Approach for Analysis of Biomacromolecular Channels. Journal of Cheminformatics. 5(1): 39.
    (Note: This is a citation for MOLE 2.0.)

    • *Full citation information available through

  • Categories


  • Default Versions

    Linux 64 2.0
    OS X INTEL 2.0

  • Other Available Versions

    Linux 32 1.2
    Linux 32 2.0
    Linux 64 1.2
    OS X INTEL 1.2
    powermac 1.2

  • Developers

    Jaroslav Koča, Michal Otyepka, Martin Petrek.