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Supported Applications


  • Description

    Membrane segmentation in 3D for cryo-electron tomography (cryo-ET).

  • Usage

    To list all executables provided by MemBrain-Seg, run: $ sbgrid-list membrain-seg Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install membrain-seg Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    F. Isensee, P. F. Jaeger, S. A. A. Kohl, J. Petersen, and K. H. Maier-Hein. 2021. nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation. Nature methods. 18(2): 203-211.

    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  0.0.1 (7.7 GB)
    OS X INTEL:  0.0.1 (2.4 GB)

  • Other Versions

      Linux 64:

      d76e97e (5.3 GB) , e28baac (5.3 GB)
    • OS X INTEL:

      d76e97e (1.3 GB) , e28baac (1.4 GB)
  • Developers

    Lorenz Lamm, Alister Burt, Benjamin Barad, Kevin Yamauchi, Ricardo Righetto