Supported Applications


  • Description

    a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes. It reports single-nucleotide mutations, point insertions and deletions, large deletions, and new junctions supported by mosaic reads.

  • Primary Citation*

    D. E. Deatherage and J. E. Barrick. 2014. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol Biol. Springer New York. 1151: 165-188.

    • *Full citation information available through

  • Categories


  • Default Versions

    Linux 64 0.27.1
    OS X INTEL 0.27.1

  • Other Available Versions

    Linux 32 1.00rc8
    Linux 64 1.00rc8
    OS X INTEL 1.00rc8

  • Developers

    Jeffrey Barrick, Daniel Deatherage, Dave Knoester.