Cutting edge: Collaboration gets the most out of software - read more about SBGrid in eLife. The full list of publications authored by members of the SBGrid team:
Andrew Morin, Ben Eisenbraun, Jason Key, Paul C Sanschagrin, Michael A Timony, Michelle Ottaviano, Piotr Sliz. Cutting edge: Collaboration gets the most out of software. eLife 2013;2:e01456 (2013). Journal | PDF
Structure determination portal and grid computing:
- Ian Stokes-Rees and Piotr Sliz. Protein Structure Determination by exhaustive search of Protein Data Bank derived databases. PNAS (2010). Journal | PDF
- Daniel J O'Donovan, Ian Stokes-Rees, Yunsun Nam, Stephen Blacklow, Gunnar F Schroder, Axel T Brunger and Piotr Sliz. A grid-enabled web service for low-resolution crystal structure refinement. Acta Crystallographica D68: 261-267 (2012). Django-condor code | Journal | PDF
- Ian Stokes-Rees, Ian Levesque, Frank V. Murphy IV, Wei Yang, Ashley Deacon and Piotr Sliz. Adapting federated cyberinfrastructure for shared data collection facilities in structural biology. Journal of Synchrotron Radiation 19:462-467 (2012). Journal | PDF
- Ian Stokes-Rees and Piotr Sliz. Compute and data management strategies for grid deployment of high throughput protein structure studies. 3rd IEEE workshop on Many-Task Computing on Grids and Supercomputers. (2010). PDF
Software Licensing and Open Source:
- Andrew Morin and Piotr Sliz. Optimizing Peer Review of Software Code. Science 341: 236-237 (2013). Journal | PDF
- Andrew Morin, Jennifer Urban, Paul D Adams, Ian Foster, Andrej Sali, David Baker and Piotr Sliz. Shining Light into Black Boxes. Science 6078: 159-160 (2012). Letter from Yale | Journal | PDF
- Andrew Morin, Jennifer Urban and Piotr Sliz. A quick guide to software licensing for the scientist-programmer. PLoS Computational Biology 8: e1002598 (2012). Journal | PDF
Structural Biology Software:
- Andrew Morin and Piotr Sliz. Structural biology computing: Lessons for the biomedical research sciences. Biopolymers (2013). Journal | PDF
- Amber L McConahy, Ben Eisenbraun, James Howison, James D Herbsleb and Piotr Sliz. Techniques for Monitoring Runtime Architectures of Socio-technical Ecosystems. 2012 ACM Conference on Computer Supported Cooperative Work: Data-Intensive Collaboration in Science and Engineering Workshop. (2012). Journal | PDF