a2269b9411950da8474ea1db2cea22de14d7e884
downloads/sbmigrate-site
... | ... | @@ -3,12 +3,13 @@ |
3 | 3 | |
4 | 4 | USAGE="Usage : sbmigrate-site [ site name ]" |
5 | 5 | |
6 | - |
|
7 | 6 | PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin:$PATH |
8 | 7 | INSTALLERCONFIG="$HOME/.sbgrid_installer" |
9 | 8 | BACKUPCONFIG="$HOME/.sbgrid_installer_site_migrated" |
10 | 9 | SITENAME_FILE="/programs/share/sitename" |
11 | 10 | |
11 | +echo "Running pre-migration checks" |
|
12 | + |
|
12 | 13 | touch "/programs/share/site_migrate_check" 2>/dev/null |
13 | 14 | if [ $? != 0 ]; then |
14 | 15 | echo "This user cannot write to /programs/share" |
... | ... | @@ -17,7 +18,7 @@ if [ $? != 0 ]; then |
17 | 18 | echo "continue without write access. " |
18 | 19 | exit 1 |
19 | 20 | else |
20 | - echo "Write check passed." |
|
21 | + echo " - Write check passed." |
|
21 | 22 | fi |
22 | 23 | |
23 | 24 | if [ ! -e $INSTALLERCONFIG ]; then |
... | ... | @@ -25,13 +26,13 @@ if [ ! -e $INSTALLERCONFIG ]; then |
25 | 26 | echo "Cannot continue migration. Exiting." |
26 | 27 | exit 1 |
27 | 28 | else |
28 | - echo "$INSTALLERCONFIG config found." |
|
29 | + echo " - $INSTALLERCONFIG config found." |
|
29 | 30 | fi |
30 | 31 | |
31 | 32 | if [ -f $SITENAME_FILE ]; then |
32 | 33 | SITENAME=$(cat $SITENAME_FILE) |
33 | 34 | DATABASE="/programs/share/packages-${SITENAME}.db" |
34 | - echo "sitename file found." |
|
35 | + echo " - sitename file found." |
|
35 | 36 | else |
36 | 37 | echo "No site configuration found." |
37 | 38 | echo "Cannot continue migration. Exiting." |
... | ... | @@ -43,39 +44,77 @@ if [ ! -e "${DATABASE}" ]; then |
43 | 44 | echo "Cannot continue migration. Exiting." |
44 | 45 | exit 1 |
45 | 46 | else |
46 | - echo "database file found at: $DATABASE" |
|
47 | + echo " - database file found at: $DATABASE" |
|
47 | 48 | fi |
48 | 49 | |
49 | -echo "Required installation files found." |
|
50 | +echo "All required installation files found." |
|
50 | 51 | echo "---------------------------------" |
51 | 52 | echo |
52 | 53 | |
53 | 54 | if [ $1 ]; then |
54 | 55 | install_sitename=$1 |
55 | 56 | else |
56 | - echo "This script will migration your the site configuration" |
|
57 | + echo "This script will migrate the site configuration" |
|
57 | 58 | echo "for your SBGrid installation. You will be able to" |
58 | - echo "confirm your settings before the migration happens. You" |
|
59 | - echo "will need the new site name that was sent ny email." |
|
60 | - echo "This process should be fast and will not impact running jobs." |
|
59 | + echo "confirm your settings before the migration happens." |
|
60 | + echo "You may need the new site name that was sent by email" |
|
61 | + echo "if your advisor is not listed below." |
|
62 | + echo "The process will be fast and will not impact running jobs." |
|
61 | 63 | echo |
62 | 64 | echo "Exit at any time with a CTRL-c." |
63 | 65 | echo |
66 | + |
|
64 | 67 | unset install_sitename |
65 | - echo "Enter the SBGrid site name:" |
|
66 | - read install_sitename |
|
68 | + echo "Please select your site name from this list:" |
|
69 | + echo " PI (site name)" |
|
70 | + echo "1) Dessen (dessen_a_514i)" |
|
71 | + echo "2) Nicolet (nicolet_y_359i)" |
|
72 | + echo "3) Nury (nury_h_512i)" |
|
73 | + echo "4) Petosa (petosa_c_148i)" |
|
74 | + echo "5) Schoehn (schoehn_g_408i)" |
|
75 | + echo "6) Weik (weik_m_513i)" |
|
76 | + echo "7) Other (enter manually)" |
|
77 | + echo "---------------------------------" |
|
78 | + read labvar |
|
79 | + |
|
80 | + case $labvar in |
|
81 | + 1) |
|
82 | + install_sitename="dessen_a_514i" |
|
83 | + ;; |
|
84 | + 2) |
|
85 | + install_sitename="nicolet_y_359i" |
|
86 | + ;; |
|
87 | + 3) |
|
88 | + install_sitename="nury_h_512i" |
|
89 | + ;; |
|
90 | + 4) |
|
91 | + install_sitename="petosa_c_148i" |
|
92 | + ;; |
|
93 | + 5) |
|
94 | + install_sitename="schoehn_g_408i" |
|
95 | + ;; |
|
96 | + 6) |
|
97 | + install_sitename="weik_m_513i" |
|
98 | + ;; |
|
99 | + *) |
|
100 | + echo "Enter the SBGrid site name:" |
|
101 | + read install_sitename |
|
102 | + ;; |
|
103 | + esac |
|
67 | 104 | fi |
68 | 105 | |
69 | 106 | echo "Does this site name look correct? Y/n" |
70 | -echo |
|
71 | -echo $install_sitename |
|
72 | -echo |
|
107 | +echo " " |
|
108 | +echo " $install_sitename" |
|
109 | +echo " " |
|
73 | 110 | |
74 | 111 | read confirmation |
75 | -if [ $confirmation == Y ]; then |
|
76 | - echo "Great. Migrating installation." |
|
112 | +if [ $confirmation == Y ] || [ $confirmation == y ] ; then |
|
113 | + echo "Great. Migrating this installation." |
|
114 | + echo " " |
|
77 | 115 | else |
78 | - echo "No problem, we can start over. No files were changed." |
|
116 | + echo "No problem, we can start over." |
|
117 | + echo "No files were changed." |
|
79 | 118 | exit 0 |
80 | 119 | fi |
81 | 120 | |
... | ... | @@ -87,18 +126,16 @@ fi |
87 | 126 | |
88 | 127 | # create new .sbgrid_installer file |
89 | 128 | TMPCONFIG="${INSTALLERCONFIG}.tmp" |
90 | -if [ -e $TMPCONFIG ]; then |
|
91 | - rm $TMPCONFIG |
|
92 | -fi |
|
93 | 129 | |
94 | 130 | if [ ! -e $BACKUPCONFIG ]; then |
95 | 131 | cp -av $INSTALLERCONFIG $BACKUPCONFIG |
96 | 132 | else |
97 | - echo "backup config found from previous migration" |
|
133 | + echo "Backup config found from previous migration" |
|
98 | 134 | echo "Will not overwrite $BACKUPCONFIG" |
99 | 135 | fi |
100 | 136 | |
101 | -cp -av $INSTALLERCONFIG $TMPCONFIG |
|
137 | +# do |
|
138 | +cat $INSTALLERCONFIG > $TMPCONFIG |
|
102 | 139 | |
103 | 140 | head -n 1 $TMPCONFIG >${INSTALLERCONFIG} |
104 | 141 | echo "site = $install_sitename" >>${INSTALLERCONFIG} |
... | ... | @@ -106,6 +143,7 @@ grep 'user = ' $TMPCONFIG >>${INSTALLERCONFIG} |
106 | 143 | grep 'key = ' $TMPCONFIG >>${INSTALLERCONFIG} |
107 | 144 | grep 'target = ' $TMPCONFIG >>${INSTALLERCONFIG} |
108 | 145 | echo >>${INSTALLERCONFIG} |
146 | +echo "Configuration update completed." |
|
109 | 147 | |
110 | 148 | echo "$install_sitename" >${SITENAME_FILE} |
111 | 149 | NEWDATABASE="/programs/share/packages-${install_sitename}.db" |
... | ... | @@ -113,18 +151,18 @@ NEWDATABASE="/programs/share/packages-${install_sitename}.db" |
113 | 151 | if [ ! -e "$DATABASE.backup" ]; then |
114 | 152 | cp -av $DATABASE $DATABASE.backup |
115 | 153 | else |
116 | - echo "previously backed-up database exists" |
|
154 | + echo "Previously database backed-up exists" |
|
117 | 155 | fi |
118 | 156 | |
119 | 157 | if [ -e $NEWDATABASE ]; then |
120 | 158 | echo "previously migrated database exists:" |
121 | 159 | echo "$NEWDATABASE" |
122 | - echo will be overwritten. |
|
160 | + echo "This will be overwritten." |
|
123 | 161 | fi |
124 | 162 | |
125 | -mv -f $DATABASE $NEWDATABASE |
|
163 | +mv -vf $DATABASE $NEWDATABASE |
|
126 | 164 | if [ $? == 0 ]; then |
127 | - echo "database move successful" |
|
165 | + echo "Database move successful" |
|
128 | 166 | echo "Migration complete!." |
129 | 167 | |
130 | 168 | else |