Supported Applications


  • Description

    (Sequence Alignment and Modeling system) a collection of tools for creating, refining, and using linear hidden Markov models for biological sequence analysis.

  • Primary Citation*

    R. Hughey and A. Krogh. 1996. Hidden Markov models for sequence analysis: extension and analysis of the basic method. Comput Appl Biosci. 12(2): 95-107.

    • *Full citation information available through

  • Categories


  • Default Versions

    Linux 64 3.5
    OS X INTEL 3.5

  • Other Available Versions

    Linux 32 2.2.1
    Linux 32 3.4
    Linux 32 3.5

  • Developers

    SAM Developer Group, Richard Hughey, Kevin Karplus, Anders Krogh.