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RNA Framework

  • Description

    a modular toolkit developed to deal with RNA structure probing and post-transcriptional modifications mapping high-throughput data. Toolkit will help with automatic reference transcriptome creation, automatic reads preprocessing (adapter clipping and trimming) and mapping, scoring and data normalization, and accurate RNA folding prediction by incorporating structural probing data.

  • Usage

    To list all executables provided by RNA Framework, run: $ sbgrid-list rna-framework Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install rna-framework Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    D. Incarnato, F. Neri, F. Anselmi, and S. Oliviero. 2016. RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data. Bioinformatics. 32(3): 459-461.

    • *Full citation information available through

  • Keywords

    RNA-Seq Analysis

  • Default Versions

    Linux 64:  8596c2e (938.8 KB)
    OS X INTEL:  8596c2e (938.8 KB)

  • Other Versions

      Linux 64:

      20170111 (649.7 KB)
    • OS X INTEL:

      20170111 (465.2 KB)
  • Developers

    Incarnato Danny