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Supported Applications

Remediator

  • Description

    converts PDB files between PDBv2.3 and PDBv3.2 formats. It can accurately and rapidly convert in either direction: old to new OR new to old. Atom records of type ATOM, HETATM, TER, ANISOU, SIGATM, SIGUIJ, and LINK are converted, as are DNA residue names (e.g., A, C, T, G of v2.3 cf. DA, DC, DT, DG of v3.2).

  • Usage

    To list all executables provided by Remediator, run: $ sbgrid-list remediator Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install remediator Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    V. B. Chen, W. B. Arendall, J. J. Headd, D. A. Keedy, R. M. Immormino, G. J. Kapral, L. W. Murray, J. S. Richardson, and D. C. Richardson. 2010. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallographica Section D: Biological Crystallography. 66(1): 12-21.


    • *Full citation information available through

  • Keywords

    Crystallography, Electron Microscopy, NMR

  • Default Versions

    Linux 64:  1.58.110511 (8.2 MB)
    OS X INTEL:  1.58.110511 (8.2 MB)

  • Other Versions

      Linux 64:

      1.58.063008 (8.1 MB)

    • OS X INTEL:

      1.58.063008 (8.1 MB)

  • Developers

    David Richardson, Jane Richardson

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