widely used molecular visualization package developed by Warren DeLano, and now maintained by Schödinger, LLC. SBGrid non-profit laboratories have full access to the official incentive builds of PyMOL.
The SBGrid Consortium PyMOL license credentials are contained in the NOTES file in the PyMOL installation directories in your software installation.
Pymol is installed with the APBS plugin. Your PDB must be in the following format:
- No water or ligand molecules
- B-factors < 100
- No alternative conformations
- No partial occupancies
Please cite PyMol as follows, editing the version number in accordance with your usage: Schrodinger, LLC. 2010. The PyMOL Molecular Graphics System, Version X.X.