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Supported Applications

ProDy

  • Description

    a protein structural dynamics analysis software package.

    ProDy is installed as a module within python.

  • Usage

    To list all executables provided by ProDy, run: $ sbgrid-list prody Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install prody Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    A. Bakan, L. M. Meireles, and I. Bahar. 2011. ProDy: Protein Dynamics Inferred from Theory and Experiments. Bioinformatics. 27(11): 1575-1577.

    S. Zhang, J. M. Krieger, Y. Zhang, C. Kaya, B. Kaynak, K. Mikulska-Ruminska, P. Doruker, H. Li, and I. Bahar. 2021. ProDy 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python. Bioinformatics. 37(20): 3657-3659.


    • *Full citation information available through

  • Webinars

    ProDy

    Topic: Elastic Network Models and ProDy for Bimolecular Systems Dynamics
    Presenter: Ivet Bahar, University of Pittsburgh

    Host: Jason Key
    Recorded on June 26, 2016

  • Keywords

    Computational Chemistry, Python Module

  • Default Versions

    Linux 64:  2.4.1 (951.6 MB)
    OS X INTEL:  2.4.1 (844.8 MB)

  • Other Versions

      Linux 64:

      1.11 (422.4 MB) , 2.0.2 (501.9 MB) , 2.3.1 (1.3 GB)

    • OS X INTEL:

      1.10.7 (1.2 KB) , 1.11 (484.7 MB) , 1.8.2 (1.2 KB) , 2.0.2 (564.2 MB) , 2.3.1 (516.8 MB)

  • Developers

    Chakra Chennubhotla, Ivet Bahar

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