Supported Applications
OccuPy
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Description
a fast and simple python module and program to estimate local scaling of cryo-EM maps, to approximate relative occupancy and/or resolution, and optionally to equalize the map according to occupancy while suppressing solvent amplification.
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install occupy
Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
B. O. Forsberg, P. N. M. Shah, and A. Burt. 2023. A robust normalized local filter to estimate compositional heterogeneity directly from cryo-EM maps. bioRxiv 2023.01.18.524529.
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*Full citation information available through
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Keywords
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Default Versions
Linux 64:  0.1.11 (1.2 GB)
OS X INTEL:  0.1.11 (639.9 MB) -
Other Versions
Linux 64:
0.1.9 (748.9 MB) -
OS X INTEL:
0.1.8 (80.1 MB)
Developers
Björn Forsberg, Pranav Shah, Alister Burt