Supported Applications

Namdinator

Description

a commandline tool, written in BASH, that sets up and runs a MDFF (molecular Dynamics Flexible Fit) simulation in a semi automatic manner, using only the input PDB file and input density file.
Usage
To list all executables provided by Namdinator, run: $ sbgrid-list namdinator
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install namdinator Available operating systems: Linux 64
Primary Citation*

R. T. Kidmose, J. Juhl, P. Nissen, T. Boesen, J. L. Karlsen, and B. P. Pedersen. 2019. Namdinator - automatic molecular dynamics flexible fitting of structural models into cryo-EM and crystallography experimental maps. IUCrJ. 6(4): 526-531.
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