Supported Applications

gmfit

Description

superimposes molecular subunits into the density map of their complex. To reduce computational costs for the superimposing, both subunits and complexes are transformed into GMM (Gaussian Mixture Model) using the gmconvert program. Although designed to superimpose multiple atomic models of subunits into a low-resolution 3D density map, gmfit can also be applied to superimposing two 3D density maps or two atomic models.
Usage
To list all executables provided by gmfit, run: $ sbgrid-list gmfit
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install gmfit Available operating systems: Linux 64
Primary Citation*

T. Kawabata. 2008. Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex Using a Gaussian Mixture Model. Biophysical Journal. 95(10): 4643-4658.
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