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Supported Applications

Fiji

  • Description

    an image processing package. It can be described as a distribution of ImageJ (and ImageJ2) together with Java, Java 3D and a lot of plugins organized into a coherent menu structure. Fiji compares to ImageJ as Ubuntu compares to Linux.

  • Usage

    To list all executables provided by Fiji, run: $ sbgrid-list fiji Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install fiji Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. Schindelin, I. Arganda-Carreras, E. Frise, V. Kaynig, M. Longair, T. Pietzsch, S. Preibisch, C. Rueden, S. Saalfeld, B. Schmid, J.-Y. Tinevez, D. J. White, V. Hartenstein, K. Eliceiri, P. Tomancak, and A. Cardona. 2012. Fiji: an open-source platform for biological-image analysis. Nature Methods. 9(7): 676-682.


    • *Full citation information available through

  • Citation Note

    Many plugins have been published separately as summarized on Fiji's publications (http://fiji.sc/Publications) page. The authors of Fiji would like Fiji users to cite both the paper listed as the primary citation below as well as the plugin specific paper. However, if journal reference limits interfere, the plugin specific publication should take precedence.

  • Keywords

    Other

  • Default Versions

    Linux 64:  2.14.0 (542.8 MB)
    OS X INTEL:  2.14.0 (647.8 MB)

  • Other Versions

      Linux 64:

      20160310 (368.3 MB) , 20190218 (441.5 MB) , 2.1.0 (503.1 MB) , 2.9.0 (499.8 MB)

    • OS X INTEL:

      20160310 (358.2 MB) , 20190218 (420.4 MB) , 2.1.0 (510.8 MB) , 2.9.0 (1014.0 MB)
    • Common files size: 23.1 MB

  • Developers

    Mark Hiner, Curtis Rueden, Kevin Eliceiri, Pavel Tomancak

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