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Supported Applications

DEFMap

  • Description

    (Dynamics Extraction From cryo-em Map) provides an implementation of a dynamics prediction from a cryo-EM density map.

  • Usage

    To list all executables provided by DEFMap, run: $ sbgrid-list defmap Copy to clipboard

  • Usage Notes

    Google Colaboratory version of DEFMap is also available. https://colab.research.google.com/gist/sishida21/a75503ad30aa6f11f99e7d2af8467727/colabdefmap-ipynb.ipynb#scrollTo=hcZeBpivZOJH

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install defmap Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    S. Matsumoto, S. Ishida, M. Araki, T. Kato, K. Terayama, and Y. Okuno. 2021. Extraction of protein dynamics information from cryo-EM maps using deep learning. Nature Machine Intelligence. 3: 153-160.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  1.0.1 (1.3 KB)

  • Other Versions

      Linux 64:

      1.0.1-cpu (5.5 GB) , 1.0.1-gpu (6.6 GB)

  • Developers

    Shigeyuki Matsumoto, Shoichi Ishida

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