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AppCiter will help you create a bibliography of the programs you wish to cite. See How.
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Name Description Links
an implementation of the inference pipeline of AlphaFold v2.0 using a completely new model that was entered in CASP14.
an Open-Source Program for Data Visualization and Analysis with Chemical Intelligence
is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
Keywords:
Visualization
enables fast and sensitive comparisons of large structure sets.
(Integrative Genomics Viewer) a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.
is a Python library for n-dimensional image visualisation, annotation, and analysis.
Keywords:
Visualization
is an IPython/Jupyter widget to interactively view molecular structures and trajectories.
a trainable, memory-efficient, and GPU-friendly PyTorch reproduction of DeepMind's AlphaFold 2.
is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny.
is a program that generates publication-quality protein secondary structure diagrams from three-dimensional protein structures. To depict relationships between secondary structure and other protein features, diagrams can be colored by conservation score, B-factor, or custom scoring.
command line tools for sequence logo generation.
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