Supported Applications
IGV
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Description
(Integrative Genomics Viewer) a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.
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Usage
To list all executables provided by IGV, run:$ sbgrid-list igv -
Usage Notes
https://github.com/broadinstitute/IGV/issues
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install igvAvailable operating systems: Linux 64, OS X INTEL -
Primary Citation*
J. T. Robinson, H. Thorvaldsdóttir, W. Winckler, M. Guttman, E. S. Lander, G. Getz, and J. P. Mesirov. 2011. Integrative genomics viewer. Nature Biotechnology. 29: 24-26.
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*Full citation information available through
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Citation Note
James T. Robinson, Helga Thorvaldsdóttir, Douglass Turner, Jill P. Mesirov. igv.js: an embeddable JavaScript
implementation of the Integrative Genomics Viewer (IGV), Bioinformatics, 39(1) (2023), btac830
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Keywords
ChIP-Sequencing, DNA-Sequencing, Genome Annotation, Genome Visualization, Genomics, Visualization
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Default Versions
Linux 64: 2.17.0 (168.7 MB)
OS X INTEL: 2.17.0 (142.2 MB) -
Other Versions
Linux 64:
2.11.9 (174.3 MB) , 2.16.0 (153.3 MB) , 2.16.2 (153.3 MB) -
OS X INTEL:
2.11.9 (177.9 MB) , 2.16.0 (156.9 MB) , 2.16.2 (156.9 MB)
Developers
Helga Thorvaldsdottir, Jacob Silterra, Jill Mesirov, Jim Robinson