Supported Applications

Description

(Collaborative Computational Project for Electron cryo-Microscopy) a software framework and resulting software suite that includes tools for project and data management along with a focus on building and refinement of atomic models into cryo-EM reconstructions. The framework allows easy access to various programs and utilities from collaborators via Python task wrappers and a user-friendly graphical user interface or a command-line interface suitable for scripting.

Usage

Usage Notes

All SBGrid members must complete the CCP-EM license and return the executed document directly to the Science and Technology Facilities Council as part of United Kingdom Research and Innovation, s specified on the CCP-EM licensing page: http://www.ccpem.ac.uk/licensing/..

Version 0.9 of coot contains a bug in hardware stereo display mode. To re-enable hardware stereo, run echo "(set-display-lists-for-maps 0)" >> ~/.coot

Installation

Primary Citation*

T. Burnley, C. M. Palmer, and M. Winn. 2017. Recent developments in the CCP-EM software suite. Acta Crystallographica Section D STRUCTURAL BIOLOGY. 73: 469-477.

C. Wood, T. Burnley, A. Patwardhan, S. Scheres, M. Topf, A. Roseman, and M. Winn. 2015. Collaborative Computational Project for Electron cryo-Microscopy. Acta Crystallographica Section D. 71: 123-126.

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  *Full citation information available through

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Webinars

Topic: CCP-EM: software for cryo-EM
Presenter: Colin Palmer, PhD - Science and Technology Facilities Council

Recorded on May 22, 2020
Host: Shaun Rawson

Topic: Model building and validation in CCP-EM
Presenter: Colin Palmer, Computational Scientist, Science & Technology Facilities Council

Recorded on: July 23, 2019
Host: Jason Key