SBGrid Members Wiki
http://www.sbgrid.org/wiki/
2008-11-06T16:12:23+01:00SBGrid Members Wiki
http://www.sbgrid.org/wiki/
http://www.sbgrid.org/wiki/lib/images/favicon.icotext/html2008-11-06T14:12:44+01:00John Burns (wjburns2005@gmail.com)usage:post-upgrade_issues
http://www.sbgrid.org/wiki/doku.php?id=usage:post-upgrade_issues&do=diff1225998764
In CCP4, there is a button “View files from Job” Some of you Fedora 7 users may find that, when selecting a postscript file, the results no longer display. If so, try the following: Start ccp4i. Click System Administration→Config...text/html2008-10-07T15:14:30+01:00Ben Eisenbraun (bene@crystal.harvard.edu)software:operatingsystems
http://www.sbgrid.org/wiki/doku.php?id=software:operatingsystems&do=diff1223406870
The programs collection can run on Linux, OS X and IRIX machines. Last Update: 2008-10-07 Linux We build and test the programs under recent Fedora releases. We will try to address all program bugs reported for Fedora, Redhat and CentOS releases....text/html2008-10-07T14:43:46+01:00Ben Eisenbraun (bene@crystal.harvard.edu)sidebar
http://www.sbgrid.org/wiki/doku.php?id=sidebar&do=diff1223405026
Wiki Start Page Installation Notes Fedora Install Stereo SBGrid Mirrors Usage Notes / Hints Transitioning from legacy to Modern Fedora Application Notes Dock w/ MPI Delphi Grid/Cluster Computing Frealign Jobs Software Support Getti...text/html2008-06-24T09:32:27+01:00Ben Eisenbraun (bene@crystal.harvard.edu)install:fedora_install
http://www.sbgrid.org/wiki/doku.php?id=install:fedora_install&do=diff1214314347
These notes are provided as an outline of the install process for FC6 and Fedora 7. While we hope that this documentation is helpful, please note that we do not provide Linux support for labs that have not signed up for system administration service...text/html2008-04-02T11:37:27+01:00Ian Levesque (ian@sbgrid.org)software:mirrors
http://www.sbgrid.org/wiki/doku.php?id=software:mirrors&do=diff1207150647
For the benefit of the local SBGrid community, we provide high-bandwidth access to frequently-used open source software. If you would like for us to add a mirror, please contact us. Mirror Name Mirror URL Fedora http://mirror.sbgrid.org/fe...text/html2008-03-20T13:24:16+01:00Ian Levesque (ian@sbgrid.org)install:stereo
http://www.sbgrid.org/wiki/doku.php?id=install:stereo&do=diff1206033856
If you would like to utilize stereo at your graphics workstation, there are several hardware prerequisites: NVidia Quadro 1000 (or higher) graphics card CRT display capable of at least 100Hz refresh rate @ 1280×1024+ (ViewSonic G225fB recom...text/html2008-02-01T17:18:54+01:00Ben Eisenbraun (bene@crystal.harvard.edu)howtos:installation_notes
http://www.sbgrid.org/wiki/doku.php?id=howtos:installation_notes&do=diff1201904334
Click on the following image for a graphic detailing the common configuration of an SBGrid member laboratory: Pre-Install Installation Requirements Hard Drive Space80GB required / 160GB recommended Operating SystemLinux: FC4-F7 Mac: O...text/html2007-11-13T15:47:35+01:00Ian Levesque (ian@sbgrid.org)usage:versions
http://www.sbgrid.org/wiki/doku.php?id=usage:versions&do=diff1194986855
SBGrid offers different software versions for most of the distribution. Typically, we provide two or three previous versions of each program (when available). To specify an alternative version of a software title, edit (or create) $HOME/.sbgrid and...text/html2007-11-13T15:45:27+01:00Ian Levesque (ian@sbgrid.org)software:request - created
http://www.sbgrid.org/wiki/doku.php?id=software:request&do=diff1194986727
Is there a newer version of software, or entirely new software you’d like to see included in the /programs tree, please let us know. We typically provide new software in our monthly release schedule. Click here for the Software Update / Inst...text/html2007-11-13T15:44:40+01:00Ian Levesque (ian@sbgrid.org)software:help
http://www.sbgrid.org/wiki/doku.php?id=software:help&do=diff1194986680
If you are having a problem with software included in the /programs tree, or think you’ve discovered a software bug, please use the SBGrid Software Bug Report tool. Major bug fixes can be sent to your site within an hour of the fix. If the pr...text/html2007-10-23T15:07:04+01:00Ian Levesque (ian@sbgrid.org)administrative:backups
http://www.sbgrid.org/wiki/doku.php?id=administrative:backups&do=diff1193166424
SBGrid offers rsync backup services to the remote laboratories that subscribe to full administrative support, and tape backups for laboratories located at HMS. This complimentary service is provided on a best-effort basis. A more detailed descriptio...text/html2007-07-04T10:38:01+01:00Ian Levesque (ian@sbgrid.org)administrative:labs
http://www.sbgrid.org/wiki/doku.php?id=administrative:labs&do=diff1183559881
The following labs are enrolled for SBGrid System Administration services: Beglova Lab Blacklow Lab Chou Lab Eck Lab Gaudet Lab Harrison Lab Hogle Lab Jeruzalmi Lab Kahne Lab Springer Lab Walker Lab Wang Lab Wa...text/html2007-07-03T16:54:25+01:00Ian Levesque (ian@sbgrid.org)administrative:policy
http://www.sbgrid.org/wiki/doku.php?id=administrative:policy&do=diff1183496065
Administrative: User Account Policy More info coming soon regarding: Account Creation Who is eligible to obtain an account Active lab members Guest accounts (duration specified during authorization) How to request an account email form fill...text/html2007-06-19T16:13:02+01:00Ian Levesque (ian@sbgrid.org)grid:frealign
http://www.sbgrid.org/wiki/doku.php?id=grid:frealign&do=diff1182283982
The first step towards submitting jobs using Grid Engine is to ensure that you have passwordless SSH access to each of the cluster nodes. If you don’t already have an SSH key installed on your account, you can create one using the following c...text/html2007-02-09T13:26:24+01:00playground - created
http://www.sbgrid.org/wiki/doku.php?id=playground&do=diff1171045584
Testing a page List 4 List 5 ...text/html2006-08-29T23:13:06+01:00Ian Levesque (ian@sbgrid.org)start
http://www.sbgrid.org/wiki/doku.php?id=start&do=diff1156907586
Documentation related to your SBGrid membership is published here for reference. If you’d like to help contribute to our wiki, please email help@sbgrid.org. Please note that this wiki is in its early stages, so content is quite certainly su...text/html2006-08-29T22:53:25+01:00Ian Levesque (ian@sbgrid.org)applications:dock
http://www.sbgrid.org/wiki/doku.php?id=applications:dock&do=diff1156906405
Other information about Dock6 can be found in the user’s manual: http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm ...text/html2006-08-25T15:04:24+01:00Ian Levesque (ian@sbgrid.org)applications:delphi
http://www.sbgrid.org/wiki/doku.php?id=applications:delphi&do=diff1156532664
AKA: How to replace Grasp’s functionality on Linux create a parameters file called delphi.prm with the contents: in(pdb, file="/path/to/your/filename.pdb") in(crg, file="/programs/i386-linux/delphi/1.1/full.crg") AC = tru...text/html2006-06-06T16:53:55+01:00Ian Levesque (ian@sbgrid.org)software:genemine - created
http://www.sbgrid.org/wiki/doku.php?id=software:genemine&do=diff1149627235
use ssh -X localhost to launch xlook ...text/html2006-05-09T18:28:08+01:00Piotr Sliz (sliz@crystal.harvard.edu)grid:east_quad
http://www.sbgrid.org/wiki/doku.php?id=grid:east_quad&do=diff1147213688
Accounts on EQC are available through help@sbgrid.org. General Info TBD Grid Software N1 Grid Engine 6.0 Master node: mn Documentation Documentation http://docs.sun.com/app/docs/coll/1017.3 Bioteam article describing differences between v...