http://www.sbgrid.org/wiki/ 2012-02-04T03:30:43-05:00 http://www.sbgrid.org/wiki/ http://www.sbgrid.org/wiki//www.sbgrid.org/wiki/lib/tpl/sidebar/images/favicon.ico text/html 2012-01-31T09:42:51-05:00 Ben Eisenbraun http://www.sbgrid.org/wiki/software/installation_admin?rev=1328020971&do=diff 'sbgrid-admin' Utility The sbgrid-admin utility used to install the software has a few other uses. It includes built-in help: $ sbgrid-admin -h sbgrid-admin: a tool for administering an SBGrid Software suite installation Usage: sbgrid-admin [-chirstu] -c Cron mode. Used for automated updates of the software suite. -h Help message. -i Install the software suite on this machine. -p Print a launchd plist for updating the software on OS X machines. -r Regenerate sh/csh shell config… text/html 2012-01-19T15:44:39-05:00 Ben Eisenbraun http://www.sbgrid.org/wiki/install/stereo?rev=1327005879&do=diff Last update: Sept 9, 2010 Stereo technology is at the beginning of a transition from using CRT monitors with emitters and shutter glasses to supporting LCDs with either shutter glasses or passive image polarization. Whereas CRT stereo technology sprouted from the demands in engineering and research, LCD stereo is being targeted largely towards the gaming community. This, combined with the fact that LCD support is in relative infancy, means we can't be certain to what extent the stereo LCD marke… text/html 2011-12-02T13:13:44-05:00 Ben Eisenbraun http://www.sbgrid.org/wiki/software/operatingsystems?rev=1322849624&do=diff The SBGrid Software Suite can run on Linux, OS X and IRIX machines. Last Update: 2011-11-17 Linux We build and test most software under Red Hat 5. The majority of our linux users are using the Red Hat/CentOS/Scientific Linux or Fedora distributions, but we also have labs using the software with Ubuntu, Debian and OpenSuSE. We don't explicitly test the software on these distributions, but it is known to work, and we will work to resolve problems reported by users of these linux distributions… text/html 2011-11-28T11:18:28-05:00 Ben Eisenbraun http://www.sbgrid.org/wiki/howtos/installation_notes?rev=1322497108&do=diff Site Configuration The SBGrid Software Suite is designed to be installed on a single computer at your site, which will then share that installation with all the workstations on your network via NFS. We refer to this computer as the site “master” server. text/html 2011-11-22T17:34:16-05:00 Ben Eisenbraun http://www.sbgrid.org/wiki/software/admin_overrides?rev=1322001256&do=diff Most of the software titles installed in the SBGrid Suite have several versions available. Typically, we try to provide at least three versions of each software package, although very old or very new applications may have fewer versions. There are two methods for site admins to configure version overrides using files placed in a /programs/local/conf/ directory. text/html 2011-11-22T17:30:23-05:00 Ben Eisenbraun http://www.sbgrid.org/wiki/usage/versions?rev=1322001023&do=diff Most of the software titles installed in the SBGrid Suite have several versions available. Typically, we try to provide at least three versions of each software package, although very old or very new applications may have fewer versions. Display Available Versions To list the available versions of a software title, you can use the sbgrid utility. Running sbgrid -l will list the versions for your current platform. From a linux machine, a search for CCP4 versions looks like this: text/html 2011-10-13T14:36:56-05:00 Ben Eisenbraun http://www.sbgrid.org/wiki/software/workstation_setup?rev=1318531016&do=diff This is a bit of a brain dump of things that need to be addressed. I will clean it up soon. -ben Linux * All hosts need installations of a recent version (6.17+) of csh/tcsh. There are RPMs for Red Hat/CentOS/Scientific Linux 4.x and 5.x in the software tree at /programs/i386-linux/system/RPMs. Other distributions usually have an up to date version. * SELinux must be disabled. * 64-bit hosts need the 32-bit compatibility packages installed as well as common 32-bit libraries for graphics… text/html 2011-08-05T10:43:04-05:00 Ben Eisenbraun http://www.sbgrid.org/wiki/software/localsync?rev=1312555384&do=diff If you run a machine that is frequently disconnected from the network, like a laptop, or don't want to set up an NFS-shared software installation, it is possible to install the software to your local machine. There is a script in the programs tree that can be used to copy the appropriate branch from a shared installation to your laptop or workstation. text/html 2011-07-18T11:51:27-05:00 Ian Levesque http://www.sbgrid.org/wiki/software/mirrors?rev=1311004287&do=diff For the benefit of the local SBGrid community, we provide high-bandwidth access to frequently-used open source software. If you would like for us to add a mirror, please contact us. Mirror Name Mirror URL CentOS <http://mirror.sbgrid.org/centos> text/html 2011-06-20T13:25:55-05:00 Ben Eisenbraun http://www.sbgrid.org/wiki/developers/resources?rev=1308590755&do=diff The basic account is a UNIX shell account accessible via SSH. This network account will let you access designated machines in the developer network. Along with the shell account you also get up to 10 GB of data storage, access to high performance compilers, basic development tools like version control systems (svn, git, etc) and shell text editors.