SBGrid Consortium - Supported Software

2D Crystallography

SBGrid supports 4 2d crystallography software titles. The following software packages are supported by SBGrid; availability of a specific software package may be limited based on license requirements.

Software Title	Description	Linux 32-bit	Linux 64-bit	OS X Intel	Links	HiddenDetail
MRC Cambridge Image Processing System	- determines the structure of macromolecular assemblies. The approach has been to study specimens with some form of ...	check	check	check		determines the structure of macromolecular assemblies. The approach has been to study specimens with some form of symmetry, such as crystals or helical and icosahedral particles, using programs suitable for many kinds of 2-D and 3-D analysis. Developers Judith Short Categories 2D Crystallography Electron Microscopy Versions Linux 32: 05.05.2011 Linux 64: 05.05.2011 OSX Intel: 05.05.2011 OSX PPC: 27.06.2007 SGI Irix: 13.08.2002 Citations Smith. Ximdisp--A visualization tool to aid structure determination from electron microscope images. Journal of structural biology (1999) vol. 125 (2-3) pp. 223-8 Crowther et al. MRC image processing programs. Journal of structural biology (1996) vol. 116 (1) pp. 9-16 License Type This software is distributed under a Non-Profit license.
determines the structure of macromolecular assemblies. The approach has been to study specimens with some form of symmetry, such as crystals or helical and icosahedral particles, using programs suitable for many kinds of 2-D and 3-D analysis. Developers Judith Short Categories 2D Crystallography Electron Microscopy Versions Linux 32: 05.05.2011 Linux 64: 05.05.2011 OSX Intel: 05.05.2011 OSX PPC: 27.06.2007 SGI Irix: 13.08.2002 Citations Smith. Ximdisp--A visualization tool to aid structure determination from electron microscope images. Journal of structural biology (1999) vol. 125 (2-3) pp. 223-8 Crowther et al. MRC image processing programs. Journal of structural biology (1996) vol. 116 (1) pp. 9-16 License Type This software is distributed under a Non-Profit license. Static link to the SBGrid MRC Cambridge Image Processing System page.
PDB Validation Suite	- a set of tools used by the PDB for processing and checking structure data.	check		check		a set of tools used by the PDB for processing and checking structure data. Developers RCSB Categories 2D Crystallography Utilities Versions Linux 32: 8.061 OSX Intel: 8.061 OSX PPC: 8.061 License Type This software is distributed under an Open license.
a set of tools used by the PDB for processing and checking structure data. Developers RCSB Categories 2D Crystallography Utilities Versions Linux 32: 8.061 OSX Intel: 8.061 OSX PPC: 8.061 License Type This software is distributed under an Open license. Static link to the SBGrid PDB Validation Suite page.
The Image Processing Library & Toolbox (IPLT)	- a 2D Crystallography Suite developed by Andreas Schenk.	check	check	check		a 2D Crystallography Suite developed by Andreas Schenk. Categories 2D Crystallography Versions Linux 32: r1862 Linux 64: r1833 OSX Intel: r1862 Citations Philippsen et al. Collaborative EM image processing with the IPLT image processing library and toolbox. J Struct Biol (2007) vol. 157 (1) pp. 28-37 Philippsen et al. IPLT: image processing library and toolkit for the electron microscopy community. J Struct Biol. 2003. 144(1-2):4-12. License Type This software is distributed under an Open license.
a 2D Crystallography Suite developed by Andreas Schenk. Categories 2D Crystallography Versions Linux 32: r1862 Linux 64: r1833 OSX Intel: r1862 Citations Philippsen et al. Collaborative EM image processing with the IPLT image processing library and toolbox. J Struct Biol (2007) vol. 157 (1) pp. 28-37 Philippsen et al. IPLT: image processing library and toolkit for the electron microscopy community. J Struct Biol. 2003. 144(1-2):4-12. License Type This software is distributed under an Open license. Static link to the SBGrid The Image Processing Library & Toolbox (IPLT) page.
XDP	- used for processing Electron Diffraction data. Previously available only on DEC Alpha.					used for processing Electron Diffraction data. Previously available only on DEC Alpha. Categories 2D Crystallography Electron Microscopy Versions OSX PPC: 2000 License Type This software is distributed under a Non-Profit license.
used for processing Electron Diffraction data. Previously available only on DEC Alpha. Categories 2D Crystallography Electron Microscopy Versions OSX PPC: 2000 License Type This software is distributed under a Non-Profit license. Static link to the SBGrid XDP page.