The following software upgrades will be available for all branches after the Friday evening update.
Profit, as described by the author, is a "program for performing least squares fits of two protein structures. It performs a very simple and basic function, but allows as much flexibility as possible in performing this procedure. Thus one can specify subsets of atoms to be considered, specify zones to be fitted by number, sequence, or by sequence alignment." We will be updating from version 2.3 to 188.8.131.52. This is the most recent version and fixes numerous bugs.
To start it up from a shell:
profit reference.pdb mobile.pdb
For full user manual, please see:
IMOD, a tomographic image reconstruction program, will be upgraded from 3.7.3 ...
Published March 20, 2007